Indonesia Overwater Bungalows

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Looking for Indonesia Overwater Bungalows? I’ve got the lowdown on some of the country’s unique overwater villas, which are decidedly more rustic than those you’ll find in Tahiti and the Maldives. Read on to find out if an overwater bungalow in Indonesia is right for you!

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Misool Eco Resort

Courtesy Misool Eco Resort

Highlights

  • Divers Paradise

    Located inside the Raja Ampat Shark and the Manta Sanctuary Misool Eco Resort is a diver’s dream

  • Full Board

    The resort offers 7, 9, and 12 night full board packages

  • Family Friendly

    The resort can accommodate divers as young as 10-years-old

Raja Ampat’s Misool Eco Resort is a diver’s paradise! With eight overwater bungalows, a farm and fruit forest, a spa, and a robust dive program, you’ll find that your 7, 9, or 12-day stay isn’t nearly long enough!

The private island resort has a maximum capacity of 40 guests and is located inside the Raja Ampat Shark and Manta Sanctuary. With stunning reefs, rich in marine biodiversity, Misool Eco Resort established the 300,000-acre Misool Marine Reserve in 2005, showing their commitment to the ocean.

The villas are built of reclaimed tropical hardwoods and feature Balinese-style open-air bathrooms, air conditioning, and hot showers. There’s one restaurant that serves a mix of Asian and Western cuisines with a focus on local organic food and the full board package includes four meals (pre-dive mini breakfast, breakfast, lunch, and dinner) plus tea daily.

The resort is good for couples, families, or groups, and can accommodate divers as young as 10 years old.

Menjaga Bay Resort

Courtesy Menjaga Bay Resort

Highlights

  • Peak Privacy

    The resort itself is secluded and the overwater bungalows offer another layer of peace and privacy

  • See the sealife

    The area surrounding the resort is beautiful—above and below the water with the nearby snorkeling and diving getting high marks

  • Stay for three, transfer for free

    Resort stays of three or more nights receive free airport transfers

Menjaga Bay Resort is set on a quiet bay on the edge of the stunning Komodo National Park. The resort is secluded and the overwater bungalows, built in local bamboo style with modern conveniences, are angled towards the sea, offering understated luxury and privacy with stellar views. Enjoy the spa, snorkel, take a dip in the resort’s pool, or take their full-day Komodo tour to see the famous Komodo dragons. The road to the resort is bumpy, so use their boat transfer for a smoother ride. WiFi is available but slow due to the resort’s seclusion, so disconnect and enjoy your break from reality.

Bawah Reserve

Courtesy Bawah Reserve

Highlights

  • Daily Spa Treatments

    Enjoy your daily included spa treatment at one of three spas

  • Stunning Views

    With no light pollution, Bawah Reserve is an ideal place to see the stars

  • Turtle-y Awesome

    If you visit between July and October, you may witness hatchlings being released from their turtle nesting project

Take a 75-min seaplane from Singapore and you’ll find yourself on a six-island archipelago in a 1,000-hectare marine conservation area at Bawah Reserve. The resort’s 36 suites, overwater bungalows, lodges, and villas feature canopy beds, copper bathtubs, and for the overwater bungalows, direct water access. Enjoy drinks at the pool bar or the hillside bar and dine on meals largely sourced from the resort’s organic gardens in the trees at Tree Tops or down at the beach at The Boat House.

Room rates are inclusive of meals, land and sea activities, spa treatments, WiFi, laundry, and taxes.

Pulau Macan Eco Resort

Courtesy Pulau Macan Eco Resort

Highlights

  • Off-the-Grid

    Power and WiFi are available, but this is the ideal location to disconnect from the demands of daily life

  • Stunning Views

    West-facing bungalows offer stunning sunset views

  • Water Access

    Direct water access from your overwater bungalow makes it easy to take a dip

Located in the Thousand Islands about two hours by boat from the hustle and bustle of Jakarta Pulau Macan Eco Resort is rustic (think open-air rooms with outside showers and mosquito netting) but comfortable. The eco-friendly resort, powered mostly by solar, has no air conditioning in the rooms, but they are west-facing for sunset views and do have direct ocean access.

The resort has power and WiFi, but it’s truly a place where you want to disconnect from daily life and swim, snorkel, and canoe to a nearby private island to enjoy its beautiful beach

With its gorgeous water and open air-restaurant, this private island escape is ideal for couples or families and groups (the sunset oceanfront has 1 queen and 4 single beds).

PuloCinta

Courtesy PuloCinta

Highlights

  • Night Sky Delight

    Its remote location and dark sky makes PuloCinta an ideal place for nighttime star gazing

  • Romantic Setting

    If the heart-shaped boardwalk isn’t romantic enough, the stunning views and private sundecks add to the sweet setting

  • Away from it all

    Getting to PuloCinta is a process, but its remote location offers peak privacy

With its overwater bungalows nicely spaced out across a heart-shaped boardwalk, you’d think PuloCinta is a couple’s dream resort. And it is! But one, two, and three-bedroom villas that sleep 2-6 are available meaning it’s also good for families and groups. The villas are 100% solar with WiFi, freshwater showers, and private sun decks among the amenities.

It takes a bit of doing to get to—a two-hour car ride followed by a 25-minute boat ride and that’s after you’ve flown to Sulawesi by way of Jakarta—but the views, snorkeling and diving, the natural beauty, and nighttime star gazing make it well worth it.

WODA Villa and Spa

Courtesy WODA Villa and Spa

Highlights

  • Zen Included

    Packages include daily massages

  • Near the Action

    A nearby nightclub makes for lively evening activities

  • ‘Gram-worthy Photos

    Get Instagram-worthy photos with the resort’s floating breakfast

WODA Villa and Spa emphasizes zen with packages that include a daily massage for two. Choose from unique treatments like a Balinese Aromatic Massage, a Royal Chocolate Spa treatment, and a Balinese Boreh body treatment.

Daily breakfast, land transfers, and WiFi are included and the villas accommodate two to three guests, making it ideal for couples. The peaceful vibes of the day don’t carry into the evening as a nearby nightclub can provide a lively soundtrack into the wee hours.

Hamueco Raja Ampat Dive Resort

Courtesy Hamueco Raja Ampat Dive Resort

Highlights

  • Swim with the Fishes

    Enjoy snorkeling in the resort’s house reef

  • Beautiful Views

    Start your mornings slowly with a sunrise and a cup of coffee on your private porch

  • Eat up!

    Meals are included and provided at set times

With a beautiful house reef and great dive options nearby, Hamueco Raja Ampat Dive Resort has everything you need for a relaxing dive trip. The accommodations are more basic than some other overwater bungalows (showers are cold and the food is fine but redundant) but the incredible views and friendly staff make up for it!

Kadidiri Paradise Resort & Dive Center

Courtesy Kadidiri Paradise Resort & Dive Center

Built in 1994 Kadidiri Paradise Resort & Dive Center is the first and oldest hotel in the Tongean islands and it’s showing its age. Each of the 30 bungalows has a private bathroom with a European toilet, a sink, a freshwater shower, electricity (from 6-11 pm) and views of the turquoise waters of Tomini Bay, however, numerous recent reviews warn against keeping food in your bungalow so that you don’t attract “jungle mice” (aka rats). With numerous other overwater bungalows in Indonesia, Kadidiri Paradise is best skipped.

Maratua Paradise Resort

Courtesy Maratua Paradise Resort

Highlights

  • Inclusive

    Rates include three meals daily

  • Off-the-Grid

    Maratua Paradise Resort has WiFi, but only in the restaurant area, so you can have a truly relaxing experience

  • Peaceful and Private

    With a small number of villas, the resort feels uncrowded and peaceful

Located on the Maratua atoll in the Derawan Archipelago off the East Kalimantan of Borneo, Maratua Paradise Resort is a diver’s paradise that you won’t want to leave! 

The resort has stunning views, clear water, and lots of marine life, ideal for snorkeling and diving. Keep your eyes peeled for Thresher Sharks, Eagle Rasy, Giant Grouper, Mandarin Fish, schools of Barracudas, Jackfish, and Bumped.

With 16 beach chalets and 10 overwater bungalows, the resort is small and feels uncrowded. All rooms have air conditioning, hot showers, bathtubs, as well as a mini-icebox and a work desk.

For a unique option, take an excursion to nearby Kakaban Island can snorkel in Jellyfish Lake among four non-stinging types of Jellyfish. Dolphin watching and whale shark sighting excursions are also available, depending on the season.

Papua Paradise Eco-Resort

Courtesy Papua Paradise Eco-Resort

Highlights

  • Environmentally Friendly

    The resort provides soap and shampoo that are eco-friendly to protect the reef, giving you one less thing to pack!

  • Low guest to divemaster ratio

    Safety is a priority and as such, the guest to divemaster ratio is low

  • Day Trips Available

    Take day trips to nearby Kri and Mansuar for even more epic dives

Located along the shores of the uninhabited island of Birie in Raja Ampat Papua Paradise Eco-Resort is an adult-centric dive-oriented resort. Keep your eyes peeled for wobbegong sharks, epaulette sharks, pygmy seahorses, blue ring octopus, turtles, and reef sharks.

Peaceful and quiet above and below water, the resort is home to 26 traditional-style bungalows with porches that overlook the house reef. The resort’s jungle meets the sea location means the island is teeming with exotic bird life and lush jungle foliage. 

Enjoy delicious food, nightly turndown service, free laundry service, and an attentive staff. Packages are fairly inclusive but arrival and departure transfers, beer and soft drinks, dive equipment rental, your Raja Ampat Marine Park Entry permit, and a few other items will cost extra.

Telunas Beach Resort and Private Island

Courtesy Telunas Beach Resort

Highlights

  • Off-the-Grid

    No WiFi and spotty cell service make Telunas Beach Resort a peaceful respite from daily life

  • Stunning Views

    Start your morning slow with a sunrise and a cup of coffee on your private porch

  • Unique Activities

    From a pottery class to traditional drumming, the resort offers some unique activites

Taking inspiration from surrounding Malay homes Telunas Beach Resort is built entirely over water. Located a 90-minute boat ride from Batam, the resort has a spotty cell signal, which means it’s perfect for getting off the grid and relaxing.

Comprised of two areas, the Beach Resort has 18 bungalows ranging from individual guest rooms to three bedrooms with a loft. The Private Island is couples-oriented and has 20 exclusive villas with 15 of them being overwater.

The overwater bungalows feature thatched roofs and expansive views, but are eco-friendly, which means no air conditioning and not highly luxurious.


The beach is well-kept and clean with a huge shallow area for swimming. If you’re feeling adventurous, you can rent a kayak or standup paddleboard and explore the nearby Mangrove area. If sitting still and relaxing isn’t your thing, go fishing or shrimping, take an island tour, a pottery lesson, or even learn traditional drumming (Kompang).

Villa Lombok Pahawang

Courtesy Villa Lombok Pahawang

Highlights

  • Full Board

    Rates include your daily meals

  • Practice Peace

    Enjoy the beautiful surroundings and detach from daily life at this picture-perfect resort

  • Keep Cool

    Each overwater villa comes with air conditioning to keep you cool in the mid-day heat

Villa Lombok Pahawang is located in Lampung, South Sumatra, and can best be described as a cluster of wooden huts floating on the sea. Each hut has a spacious terrace for sunning and stargazing amidst the beautiful surroundings. Air conditioning and hot water are among the villa amenities and the resort is great for couples, families, or groups.


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Hi, I’m Lori. But you can call me Lors. I’m a middle-aged New Jersey-born gal, currently based in Orlando, Florida. My background is in editorial travel photography and writing and I've been to more than 30 countries. I’m obsessed with tropical locales and my favorite city is Tokyo. Have camera, will travel! I’m a Disney adult, Lord of the Rings fan, certified crazy cat lady, and sushi addict! I hope this blog inspires your wanderlust. Feel free to follow me on Instagram for snippets of daily life on and off the road.